siVirus: web-based antiviral siRNA design software for highly divergent viral sequences
Identifieur interne : 004107 ( Main/Exploration ); précédent : 004106; suivant : 004108siVirus: web-based antiviral siRNA design software for highly divergent viral sequences
Auteurs : Yuki Naito [Japon] ; Kumiko Ui-Tei [Japon] ; Toru Nishikawa [Japon] ; Yutaka Takebe [Japon] ; Kaoru Saigo [Japon]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2006.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : Anti-HIV Agents, Antiviral Agents, RNA, Small Interfering, RNA, Viral.
- genetics : RNA Viruses.
- Base Sequence, Conserved Sequence, Genetic Variation, Internet, RNA Interference, Software.
Abstract
siVirus (http://siVirus.RNAi.jp/) is a web-based online software system that provides efficient short interfering RNA (siRNA) design for antiviral RNA interference (RNAi). siVirus searches for functional, off-target minimized siRNAs targeting highly conserved regions of divergent viral sequences. These siRNAs are expected to resist viral mutational escape, since their highly conserved targets likely contain structurally/functionally constrained elements. siVirus will be a useful tool for designing optimal siRNAs targeting highly divergent pathogens, including human immunodeficiency virus (HIV), hepatitis C virus (HCV), influenza virus and SARS coronavirus, all of which pose enormous threats to global human health.
Url:
DOI: 10.1093/nar/gkl214
Affiliations:
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Le document en format XML
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<front><div type="abstract" xml:lang="en">siVirus (http://siVirus.RNAi.jp/) is a web-based online software system that provides efficient short interfering RNA (siRNA) design for antiviral RNA interference (RNAi). siVirus searches for functional, off-target minimized siRNAs targeting highly conserved regions of divergent viral sequences. These siRNAs are expected to resist viral mutational escape, since their highly conserved targets likely contain structurally/functionally constrained elements. siVirus will be a useful tool for designing optimal siRNAs targeting highly divergent pathogens, including human immunodeficiency virus (HIV), hepatitis C virus (HCV), influenza virus and SARS coronavirus, all of which pose enormous threats to global human health.</div>
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